OVERVIEW
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What's New in Current Protocols in Bioinformatics
Supplement 42, June 2013
Unit 1.22 Using the iPlant Collaborative Discovery Environment
Unit 3.1 An Introduction to Sequence Similarity (“Homology”) Searching
Unit 6.13 Phylogenetic Analysis with the iPlant Discovery Environment
Unit 9.1 Creating Databases for Biological Information: An Introduction
With Current Protocols in Bioinformatics, it's easier than ever for the life scientist to become "fluent" in bioinformatics and master the exciting new frontiers opened up by DNA sequencing.
Updated every three months in all formats, CPBI is constantly evolving to keep pace with the very latest discoveries and developments. A year of these quarterly updates is included in the initial CPBI purchase price. That's 590 pages of new (80%) and revised (20%) content on average every year since the initial publication of the work in April 2002! Presently three volumes in its looseleaf print version, CPBI...
- features step-by-step instructions for working with hundreds of applications and databases from research groups around the globe.
- is designed for research biologists, not computational experts.
- shows how to select the right software parameters, analyze data, interpret results, generate hypotheses, and advance research to new levels.
- includes a valuable appendix on user fundamentals and a glossary of bioinformatics terms.
Edited by: Andreas D. Baxevanis, Editor-in-Chief (Bethesda, Maryland); William R. Pearson (University of Virginia); Lincoln D. Stein (Ontario Institute for Cancer Research); Gary D. Stormo (Washington University); John R. Yates III (The Scripps Research Institute); Advisory Editors: Daniel B. Davison (Morrisville, Pennsylvania); Gregory A. Petsko (Brandeis University); Past Editor: Roderic D.M. Page (University of Glasgow)
Developmental Editor: Ann Boyle
While the authors, editors, and publisher believe that the specification and usage of reagents, equipment, and devices, as set forth in this book, are in accord with current recommendations and practice at the time of publication, they accept no legal responsibility for any errors or omissions, and make no warranty, express or implied, with respect to material contained herein. In view of ongoing research, equipment modifications, changes in governmental regulations, and the constant flow of information relating to the use of experimental reagents, equipment, and devices, the reader is urged to review and evaluate the information provided in the package insert or instructions for each chemical, piece of equipment, reagent, or device for, among other things, any changes in the instructions or indication of usage and for added warnings and precautions. This is particularly important in regard to new or infrequently employed chemicals or experimental reagents. Moreover, the information presented herein is not a substitute for professional judgment, especially as concerns any applications in a clinical setting or the interpretation of results thereby obtained.
TABLE OF CONTENTS
- Chapter 1 Using Biological Databases
- Chapter 2 Recognizing Functional Domains
- Chapter 3 Finding Similarities and Inferring Homologies
- Chapter 4 Annotating Genes
- Chapter 5 Modeling Structure from Sequence
- Chapter 6 Inferring Evolutionary Relationships
- Chapter 7 Analyzing Expression Patterns
- Chapter 8 Analyzing Molecular Interactions
- Chapter 9 Building Biological Databases
- Chapter 10 Comparing Genomes
- Chapter 11 Assembling and Mapping Large Sequence Sets
- Chapter 12 Analyzing RNA Sequence and Structure
- Chapter 13 Using Proteomics Techniques
- Chapter 14 Cheminformatics and Metabolomics
- Chapter 15 Understanding Genome Variation
- Appendix 1 User Fundamentals
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